confirmClose in qt-config.ini not working

Citra still brings up a Yes/No confirmation dialogue regardless of qt-config.ini setting:
confirmClose=false brings up confirmation dialogue
confirmClose=true brings up confirmation dialogue

Windows 10
i9
TitanXP
All games
Citra Canary 1798, and Citra Nightly 1584

[ 0.001744] Config core/settings.cpp:LogSettings:77: Citra Configuration:
[ 0.001751] Config core/settings.cpp:LogSetting:73: Core_UseCpuJit: true
[ 0.001751] Config core/settings.cpp:LogSetting:73: Renderer_UseGLES: false
[ 0.001752] Config core/settings.cpp:LogSetting:73: Renderer_UseHwRenderer: true
[ 0.001758] Config core/settings.cpp:LogSetting:73: Renderer_UseHwShader: true
[ 0.001759] Config core/settings.cpp:LogSetting:73: Renderer_SeparableShader: false
[ 0.001759] Config core/settings.cpp:LogSetting:73: Renderer_ShadersAccurateMul: true
[ 0.001759] Config core/settings.cpp:LogSetting:73: Renderer_UseShaderJit: true
[ 0.001762] Config core/settings.cpp:LogSetting:73: Renderer_UseResolutionFactor: 7
[ 0.001762] Config core/settings.cpp:LogSetting:73: Renderer_FrameLimit: 100
[ 0.001763] Config core/settings.cpp:LogSetting:73: Renderer_UseFrameLimitAlternate: false
[ 0.001763] Config core/settings.cpp:LogSetting:73: Renderer_FrameLimitAlternate: 300
[ 0.001764] Config core/settings.cpp:LogSetting:73: Renderer_PostProcessingShader: none (builtin)
[ 0.001764] Config core/settings.cpp:LogSetting:73: Renderer_FilterMode: true
[ 0.001766] Config core/settings.cpp:LogSetting:73: Renderer_TextureFilterName: none
[ 0.001767] Config core/settings.cpp:LogSetting:73: Stereoscopy_Render3d: 0
[ 0.001767] Config core/settings.cpp:LogSetting:73: Stereoscopy_Factor3d: 0
[ 0.001768] Config core/settings.cpp:LogSetting:73: Layout_LayoutOption: 2
[ 0.001768] Config core/settings.cpp:LogSetting:73: Layout_SwapScreen: false
[ 0.001768] Config core/settings.cpp:LogSetting:73: Layout_UprightScreen: false
[ 0.001769] Config core/settings.cpp:LogSetting:73: Utility_DumpTextures: false
[ 0.001769] Config core/settings.cpp:LogSetting:73: Utility_CustomTextures: false
[ 0.001770] Config core/settings.cpp:LogSetting:73: Utility_UseDiskShaderCache: true
[ 0.001770] Config core/settings.cpp:LogSetting:73: Audio_EnableDspLle: false
[ 0.001771] Config core/settings.cpp:LogSetting:73: Audio_EnableDspLleMultithread: false
[ 0.001771] Config core/settings.cpp:LogSetting:73: Audio_OutputEngine: auto
[ 0.001771] Config core/settings.cpp:LogSetting:73: Audio_EnableAudioStretching: true
[ 0.001772] Config core/settings.cpp:LogSetting:73: Audio_OutputDevice: auto
[ 0.001772] Config core/settings.cpp:LogSetting:73: Audio_InputDeviceType: 0
[ 0.001773] Config core/settings.cpp:LogSetting:73: Audio_InputDevice: Default
[ 0.001773] Config core/settings.cpp:LogSetting:73: Camera_OuterRightName: blank
[ 0.001773] Config core/settings.cpp:LogSetting:73: Camera_OuterRightConfig:
[ 0.001774] Config core/settings.cpp:LogSetting:73: Camera_OuterRightFlip: 0
[ 0.001774] Config core/settings.cpp:LogSetting:73: Camera_InnerName: blank
[ 0.001774] Config core/settings.cpp:LogSetting:73: Camera_InnerConfig:
[ 0.001775] Config core/settings.cpp:LogSetting:73: Camera_InnerFlip: 0
[ 0.001775] Config core/settings.cpp:LogSetting:73: Camera_OuterLeftName: blank
[ 0.001776] Config core/settings.cpp:LogSetting:73: Camera_OuterLeftConfig:
[ 0.001776] Config core/settings.cpp:LogSetting:73: Camera_OuterLeftFlip: 0
[ 0.001776] Config core/settings.cpp:LogSetting:73: DataStorage_UseVirtualSd: true
[ 0.001777] Config core/settings.cpp:LogSetting:73: System_IsNew3ds: true
[ 0.001779] Config core/settings.cpp:LogSetting:73: System_RegionValue: -1
[ 0.001779] Config core/settings.cpp:LogSetting:73: Debugging_UseGdbstub: false
[ 0.001780] Config core/settings.cpp:LogSetting:73: Debugging_GdbstubPort: 24689
[ 0.111313] Input input_common/udp/client.cpp:StartCommunication:207: Starting communication with UDP input server on 127.0.0.1:26760
[ 0.331087] Frontend citra_qt/main.cpp:GMainWindow:187: Citra Version: Canary 1798 | HEAD-fb15c4b
[ 0.331096] Frontend citra_qt/main.cpp:GMainWindow:189: Host CPU: Intel® Core™ i7-5820K CPU @ 3.30GHz
[ 0.331117] Frontend citra_qt/main.cpp:GMainWindow:191: Host OS: Windows 10 (10.0)
[ 0.362267] Service.FS core/file_sys/ncch_container.cpp:Load:242: Secure1 KeyX missing
[ 0.362280] Service.FS core/file_sys/ncch_container.cpp:Load:343: NCCH is marked as encrypted but with decrypted exheader. Force no crypto scheme.
[ 0.363028] Frontend citra_qt/main.cpp:CheckForUpdates:810: Update check started
[ 0.363633] Service.FS core/file_sys/ncch_container.cpp:Load:242: Secure1 KeyX missing
[ 0.363636] Service.FS core/file_sys/ncch_container.cpp:Load:256: Secure2 KeyX missing
[ 0.363640] Service.FS core/file_sys/ncch_container.cpp:Load:343: NCCH is marked as encrypted but with decrypted exheader. Force no crypto scheme.
[ 0.364405] Service.FS core/file_sys/ncch_container.cpp:Load:242: Secure1 KeyX missing
[ 0.364413] Service.FS core/file_sys/ncch_container.cpp:Load:343: NCCH is marked as encrypted but with decrypted exheader. Force no crypto scheme.
[ 0.365113] Service.FS core/file_sys/ncch_container.cpp:Load:242: Secure1 KeyX missing
[ 0.365116] Service.FS core/file_sys/ncch_container.cpp:Load:256: Secure2 KeyX missing

In order for us to provide better support, we need to see the log generated by Citra. This guide will walk you through how you can obtain the log file: How to Upload the Log File.

[ 0.001744] Config core/settings.cpp:LogSettings:77: Citra Configuration:
[ 0.001751] Config core/settings.cpp:LogSetting:73: Core_UseCpuJit: true
[ 0.001751] Config core/settings.cpp:LogSetting:73: Renderer_UseGLES: false
[ 0.001752] Config core/settings.cpp:LogSetting:73: Renderer_UseHwRenderer: true
[ 0.001758] Config core/settings.cpp:LogSetting:73: Renderer_UseHwShader: true
[ 0.001759] Config core/settings.cpp:LogSetting:73: Renderer_SeparableShader: false
[ 0.001759] Config core/settings.cpp:LogSetting:73: Renderer_ShadersAccurateMul: true
[ 0.001759] Config core/settings.cpp:LogSetting:73: Renderer_UseShaderJit: true
[ 0.001762] Config core/settings.cpp:LogSetting:73: Renderer_UseResolutionFactor: 7
[ 0.001762] Config core/settings.cpp:LogSetting:73: Renderer_FrameLimit: 100
[ 0.001763] Config core/settings.cpp:LogSetting:73: Renderer_UseFrameLimitAlternate: false
[ 0.001763] Config core/settings.cpp:LogSetting:73: Renderer_FrameLimitAlternate: 300
[ 0.001764] Config core/settings.cpp:LogSetting:73: Renderer_PostProcessingShader: none (builtin)
[ 0.001764] Config core/settings.cpp:LogSetting:73: Renderer_FilterMode: true
[ 0.001766] Config core/settings.cpp:LogSetting:73: Renderer_TextureFilterName: none
[ 0.001767] Config core/settings.cpp:LogSetting:73: Stereoscopy_Render3d: 0
[ 0.001767] Config core/settings.cpp:LogSetting:73: Stereoscopy_Factor3d: 0
[ 0.001768] Config core/settings.cpp:LogSetting:73: Layout_LayoutOption: 2
[ 0.001768] Config core/settings.cpp:LogSetting:73: Layout_SwapScreen: false
[ 0.001768] Config core/settings.cpp:LogSetting:73: Layout_UprightScreen: false
[ 0.001769] Config core/settings.cpp:LogSetting:73: Utility_DumpTextures: false
[ 0.001769] Config core/settings.cpp:LogSetting:73: Utility_CustomTextures: false
[ 0.001770] Config core/settings.cpp:LogSetting:73: Utility_UseDiskShaderCache: true
[ 0.001770] Config core/settings.cpp:LogSetting:73: Audio_EnableDspLle: false
[ 0.001771] Config core/settings.cpp:LogSetting:73: Audio_EnableDspLleMultithread: false
[ 0.001771] Config core/settings.cpp:LogSetting:73: Audio_OutputEngine: auto
[ 0.001771] Config core/settings.cpp:LogSetting:73: Audio_EnableAudioStretching: true
[ 0.001772] Config core/settings.cpp:LogSetting:73: Audio_OutputDevice: auto
[ 0.001772] Config core/settings.cpp:LogSetting:73: Audio_InputDeviceType: 0
[ 0.001773] Config core/settings.cpp:LogSetting:73: Audio_InputDevice: Default
[ 0.001773] Config core/settings.cpp:LogSetting:73: Camera_OuterRightName: blank
[ 0.001773] Config core/settings.cpp:LogSetting:73: Camera_OuterRightConfig:
[ 0.001774] Config core/settings.cpp:LogSetting:73: Camera_OuterRightFlip: 0
[ 0.001774] Config core/settings.cpp:LogSetting:73: Camera_InnerName: blank
[ 0.001774] Config core/settings.cpp:LogSetting:73: Camera_InnerConfig:
[ 0.001775] Config core/settings.cpp:LogSetting:73: Camera_InnerFlip: 0
[ 0.001775] Config core/settings.cpp:LogSetting:73: Camera_OuterLeftName: blank
[ 0.001776] Config core/settings.cpp:LogSetting:73: Camera_OuterLeftConfig:
[ 0.001776] Config core/settings.cpp:LogSetting:73: Camera_OuterLeftFlip: 0
[ 0.001776] Config core/settings.cpp:LogSetting:73: DataStorage_UseVirtualSd: true
[ 0.001777] Config core/settings.cpp:LogSetting:73: System_IsNew3ds: true
[ 0.001779] Config core/settings.cpp:LogSetting:73: System_RegionValue: -1
[ 0.001779] Config core/settings.cpp:LogSetting:73: Debugging_UseGdbstub: false
[ 0.001780] Config core/settings.cpp:LogSetting:73: Debugging_GdbstubPort: 24689
[ 0.111313] Input input_common/udp/client.cpp:StartCommunication:207: Starting communication with UDP input server on 127.0.0.1:26760
[ 0.331087] Frontend citra_qt/main.cpp:GMainWindow:187: Citra Version: Canary 1798 | HEAD-fb15c4b
[ 0.331096] Frontend citra_qt/main.cpp:GMainWindow:189: Host CPU: Intel® Core™ i7-5820K CPU @ 3.30GHz
[ 0.331117] Frontend citra_qt/main.cpp:GMainWindow:191: Host OS: Windows 10 (10.0)
[ 0.362267] Service.FS core/file_sys/ncch_container.cpp:Load:242: Secure1 KeyX missing
[ 0.362280] Service.FS core/file_sys/ncch_container.cpp:Load:343: NCCH is marked as encrypted but with decrypted exheader. Force no crypto scheme.
[ 0.363028] Frontend citra_qt/main.cpp:CheckForUpdates:810: Update check started
[ 0.363633] Service.FS core/file_sys/ncch_container.cpp:Load:242: Secure1 KeyX missing
[ 0.363636] Service.FS core/file_sys/ncch_container.cpp:Load:256: Secure2 KeyX missing
[ 0.363640] Service.FS core/file_sys/ncch_container.cpp:Load:343: NCCH is marked as encrypted but with decrypted exheader. Force no crypto scheme.
[ 0.364405] Service.FS core/file_sys/ncch_container.cpp:Load:242: Secure1 KeyX missing
[ 0.364413] Service.FS core/file_sys/ncch_container.cpp:Load:343: NCCH is marked as encrypted but with decrypted exheader. Force no crypto scheme.
[ 0.365113] Service.FS core/file_sys/ncch_container.cpp:Load:242: Secure1 KeyX missing
[ 0.365116] Service.FS core/file_sys/ncch_container.cpp:Load:256: Secure2 KeyX missing

Are you currently editing qt-config.ini directly? Can you try uncheck the box instead?

image

It works fine on my end.