MGS3:3D Fatal error on latest canary build

My Issue -
Metal Gear Solid 3: 3D is listed as Great on the compatibility list. Unfortunately, the .CXI (Dumped from internal storage/SD Card) I got from my 3DS trying it out in the latest Canary build resulted in a generic “Fatal Error”. Attached is the log file taken after attempting to load the game (after pressing no on the error) there was nothing but a black screen. Please, help me get this solved!

The system I use -
Windows 10 Pro
Intel Core I5 7300U
Intel HD 620 Graphics
Canary | HEAD-dea2011b
Metal Gear Solid 3: 3D

Log:
[ 1.829279] Frontend citra_qt/main.cpp:BootGame:652: Citra starting…
[ 1.921542] Service.FS core/file_sys/ncch_container.cpp:LoadOverrides:244: Loaded NCCH C:\Users\Osaze Hinds\AppData\Roaming/Citra/nand/00000000000000000000000000000000/title/0004009b/00010202/content/00000000.app is tainted, application behavior may not be as expected!
[ 1.921875] Service.FS core/file_sys/ncch_container.cpp:LoadOverrides:244: Loaded NCCH C:\Users\Osaze Hinds\AppData\Roaming/Citra/nand/00000000000000000000000000000000/title/0004009b/00010402/content/00000000.app is tainted, application behavior may not be as expected!
[ 1.922229] Service.FS core/file_sys/ncch_container.cpp:LoadOverrides:244: Loaded NCCH C:\Users\Osaze Hinds\AppData\Roaming/Citra/nand/00000000000000000000000000000000/title/0004009b/00014002/content/00000000.app is tainted, application behavior may not be as expected!
[ 1.922554] Service.FS core/file_sys/ncch_container.cpp:LoadOverrides:244: Loaded NCCH C:\Users\Osaze Hinds\AppData\Roaming/Citra/nand/00000000000000000000000000000000/title/0004009b/00014102/content/00000000.app is tainted, application behavior may not be as expected!
[ 1.922882] Service.FS core/file_sys/ncch_container.cpp:LoadOverrides:244: Loaded NCCH C:\Users\Osaze Hinds\AppData\Roaming/Citra/nand/00000000000000000000000000000000/title/0004009b/00014202/content/00000000.app is tainted, application behavior may not be as expected!
[ 1.923203] Service.FS core/file_sys/ncch_container.cpp:LoadOverrides:244: Loaded NCCH C:\Users\Osaze Hinds\AppData\Roaming/Citra/nand/00000000000000000000000000000000/title/0004009b/00014302/content/00000000.app is tainted, application behavior may not be as expected!
[ 1.923536] Service.FS core/file_sys/ncch_container.cpp:LoadOverrides:244: Loaded NCCH C:\Users\Osaze Hinds\AppData\Roaming/Citra/nand/00000000000000000000000000000000/title/000400db/00010302/content/00000000.app is tainted, application behavior may not be as expected!
[ 1.926165] Input input_common/sdl/sdl.cpp:SDLJoystick:35: failed to open joystick 0
[ 1.927612] Render.OpenGL video_core/renderer_opengl/renderer_opengl.cpp:Init:487: GL_VERSION: 3.3.0 - Build 23.20.16.4982
[ 1.927619] Render.OpenGL video_core/renderer_opengl/renderer_opengl.cpp:Init:488: GL_VENDOR: Intel
[ 1.927620] Render.OpenGL video_core/renderer_opengl/renderer_opengl.cpp:Init:489: GL_RENDERER: Intel® HD Graphics 620
[ 1.971065] Loader core/loader/ncch.cpp:Load:159: Program ID: 0004000000081E00
[ 1.971205] Service.FS core/file_sys/ncch_container.cpp:OpenFile:113: Failed to open C:\Users\Osaze Hinds\AppData\Roaming/Citra/sdmc/Nintendo 3DS/00000000000000000000000000000000/00000000000000000000000000000000/title/0004000e/00081e00/content/00000000.app
[ 2.021058] Loader core/hle/kernel/process.cpp:ParseKernelCaps:114: ExHeader kernel version: 2.31
[ 2.021441] Service.FS core/file_sys/ncch_container.cpp:LoadSectionExeFS:275: Attempting to load logo from the ExeFS
[ 2.021645] Service.CFG core/hle/service/cfg/cfg.cpp:SetPreferredRegionCode:602: Preferred region code set to 1
[ 2.121981] Service.SRV core/hle/service/sm/srv.cpp:RegisterClient:48: (STUBBED) called
[ 2.122367] Service.SRV core/hle/service/sm/srv.cpp:EnableNotification:70: (STUBBED) called
[ 2.124862] Service.APT core/hle/service/apt/apt.cpp:GetLockHandle:255: (STUBBED) called applet_attributes=0X00000000
[ 2.128990] Service.NDM core/hle/service/ndm/ndm.cpp:OverrideDefaultDaemons:207: (STUBBED) default_daemon_bit_mask=0x0000000F
[ 2.129863] Service.NDM core/hle/service/ndm/ndm.cpp:SuspendDaemons:92: (STUBBED) daemon_bit_mask=0x00000009
[ 2.137102] Service.APT core/hle/service/apt/apt.cpp:NotifyToWait:234: (STUBBED) app_id=768
[ 2.140110] Service.APT core/hle/service/apt/apt.cpp:AppletUtility:455: (STUBBED) called command=0X00000007, input_size=0X00000004, output_size=0X00000001
[ 2.140506] Service.APT core/hle/service/apt/apt.cpp:AppletUtility:455: (STUBBED) called command=0X00000004, input_size=0X00000001, output_size=0X00000001
[ 2.144173] Service.APT core/hle/service/apt/apt.cpp:SetAppCpuTimeLimit:471: (STUBBED) called, cpu_percent=30, value=1
[ 2.155931] Service.SRV core/hle/service/sm/srv.cpp:Subscribe:145: (STUBBED) called, notification_id=0x215
[ 2.160678] Service.FS core/file_sys/archive_selfncch.cpp:OpenRomFS:180: Unable to read RomFS
[ 2.160684] Service.FS core/hle/service/fs/fs_user.cpp:OpenFileDirectly:117: failed to get a handle for file [Binary: 000000000000000000000000] mode=1 attributes=0
[ 2.161896] Service.ERR core/hle/service/err_f.cpp:ThrowFatalError:155: Fatal error
[ 2.161906] Service.ERR core/hle/service/err_f.cpp:ThrowFatalError:158: Fatal error type: Generic
[ 2.161908] Service.ERR core/hle/service/err_f.cpp:LogGenericInfo:135: PID: 0x0000000A
[ 2.161909] Service.ERR core/hle/service/err_f.cpp:LogGenericInfo:137: REV: 0x00000000_0x00009F99
[ 2.161910] Service.ERR core/hle/service/err_f.cpp:LogGenericInfo:139: TID: 0x00000000_0x00000000
[ 2.161910] Service.ERR core/hle/service/err_f.cpp:LogGenericInfo:141: AID: 0x00000000_0x00000000
[ 2.161911] Service.ERR core/hle/service/err_f.cpp:LogGenericInfo:142: ADR: 0x00110DA8
[ 2.161912] Service.ERR core/hle/service/err_f.cpp:LogGenericInfo:145: RSL: 0xC8804464
[ 2.161913] Service.ERR core/hle/service/err_f.cpp:LogGenericInfo:146: Level: 25
[ 2.161913] Service.ERR core/hle/service/err_f.cpp:LogGenericInfo:147: Summary: 4
[ 2.161917] Service.ERR core/hle/service/err_f.cpp:LogGenericInfo:148: Module: 17
[ 2.161918] Service.ERR core/hle/service/err_f.cpp:LogGenericInfo:149: Desc: 100
[ 2.161984] Service.ERR core/hle/service/err_f.cpp:ThrowFatalError:169: Datetime: 2018/04/27 23:30:05

Your ROM is corrupted. Please try to redump it.
Also, what method are you using for dumping games?

I used the method described here - https://github.com/citra-emu/citra/wiki/Dumping-Installed-Titles
I did this for all the games I dumped, dumping them as .CXI